USING WEATHER FORECASTS TO HELP MANAGE MENINGITIS IN THE WEST AFRICAN SAHEL
Integrating research, operations, and community engagement, a multinational and multidisciplinary team uses relative humidity forecasts to better manage meningitis In the Sahel.
Within the meningitis belt, which stretches from
The epidemics have a devastating impact on the region and its people. Untreated meningitis is fatal 50% of the time (WHO 2012). Even with treatment, the fatality rate can exceed 10%, and 10%-20% of survivors experience long-term aftereffects including brain damage and hearing loss (Greenwood et al. 1987;
Until 2010, polysaccharide vaccines were used to manage meningitis epidemics in the meningitis belt (WHO 2012). Because these vaccines are only effective for 2 years, are not protective for young children, and do not confer herd immunity, the polysaccharide vaccines were not used for preventive vaccination. Instead, vaccination campaigns employing the polysaccharide vaccines are initiated reactively in response to increases in the rate of disease within a public health district. If the number of confirmed cases of meningitis in a district exceeds the epidemic threshold defined by the
A conjugate vaccine was introduced in 2010 in
The emergence and spread of meningococcal meningitis in the Sahel depends on a complex interplay of environmental, epidemiological, economic, and sociological factors. However, there are links to weather and climate that, if understood and operationalized, could be used to lessen the disease's impact.
All reported meningitis epidemics in the Sahel have occurred during the dry season, which runs from December to May (Lapeyssonnie 1963). Greenwood et al. (1984) first documented a correlation between low humidity and meningitis in the scientific literature (see Fig. 2). Higher humidity is associated with decreased meningitis transmission (Molesworth et al. 2003) and epidemics stop with the onset of the monsoon (WHO 2012). Our extensive interviews revealed that most people in northern
Several studies have highlighted the correlation of dusty, dry conditions and meningitis (Cheesbrough et al. 1995; Besancenot et al. 1997; Molesworth et al. 2003; Sultan et al. 2005; Sultan 2005; Thomson et al. 2006; Cuevas et al. 2007; Yaka et al. 2008; Colombini et al. 2009). Airborne particulates have been linked to meningitis cases in the Sahel, including naturally occurring dust [Molesworth et al. 2003; Thomson et al. 2006;
While it would be very helpful to use environmental factors to predict the onset of meningitis epidemics, our project shied away from that for two key reasons. First, it is extremely unlikely that environmental conditions alone can be used to predict an epidemic, because epidemics depend on the confluence of a myriad of environmental, social, and biological factors. Further, many of these factors lack comprehensive data sources that can be used to inform predictive models. In contrast, we found substantial evidence that environmental conditions alone, in particular high relative humidity, can end an epidemic. This meant that predicting high relative humidity allowed us to immediately produce information that public health decision makers can use to manage reactive vaccination campaigns. Indeed, members of the ICG already avoid launching vaccination campaigns near the end of the dry season, since they believe the epidemic will end naturally with the start of the monsoon. This highlights the second reason for focusing on the end of the season: it builds on existing practices in the public health community and therefore provides a clearer path for integrating new research findings into practice. Given limited supplies of vaccine, it makes sense to prioritize those vaccines toward dry areas where the epidemic is more likely to persist and away from areas where higher humidity contributes to the end of epidemics.
Our goal in this paper is to provide a multidisciplinary project-level overview of several interconnected and complementary research results for scientists from many disciplines. In some cases, while we summarize our original results here in a form meant for a more general scientific audience, we also refer to more detailed descriptions prepared, by members of our team, for other journals with more specialized audiences. In other cases, this paper is the first presentation of original results for which we intend to produce more detailed, discipline-specific manuscripts later.
Necessarily, the project team included a wide range of disciplines, including meteorologists, public health researchers and practitioners, as well as economists and medical anthropologists. It also included experts in the design of decision support tools and delivery and visualization of data.
VERIFYING THE LINK BETWEEN MENINGITIS AND HUMIDITY. Our team pursued three lines of evidence in order to confirm the long-observed connection between humidity and meningitis and define a relative humidity threshold associated with the end of meningitis transmission. These include i) an analysis of 10 years of weekly epidemiological and meteorological data taken in Navrongo,
NHRC has a unique dataset of epidemiological and meteorological data collected for the same region and time period. The epidemiological data include total monthly counts of laboratory-confirmed meningococcal meningitis in Kassena-Nankana for the 11-yr period from 1998 to 2008. The meteorological data come from a local weather station operated by the
Figure 3 (from Dukic et al. 2012) provides a quick way to view the relationships between meteorological variables and meningitis cases using pairwise scatterplots. The scatterplots reveal that large numbers of meningitis cases occur when the maximum temperatures are high and the relative humidity is low, as indicated by the red boxes.
We also analyzed these data using generalized additive models (Hastie and Tibshirani 1990), which have been widely used to study air pollution and public health (e.g., Schwartz 1994). We found that including weather dependence in our generalized additive model improves in-season prediction of monthly laboratory-confirmed meningitis cases by up to 40%. In particular, the maximum monthly temperature of the current month and the previous month's relative humidity and carbon monoxide emissions due to fires showed the most influence on meningitis cases. This is consistent with the results of the survey of KassenaNankana residents, who indicated that meningitis is associated with hot conditions (
We also performed an analysis of meningitis cases across the entire meningitis belt using 2 years of data for the districts shown in Fig. 4. The epidemiological data were compiled from weekly district-level reports from the countries in the meningitis belt for the period from 2007 to 2009 (
We modeled the transmission of meningitis using a differential-equation-based epidemiological model (Macal et al. 2012) and used these data to determine the coefficients of that model. [The model and our analysis are described in more detail in Hopson et al. (2014).] At the district level, the model distinguishes among three groups of people: those infected with meningitis, those susceptible to meningitis, and those who harbor the bacteria but do not have symptoms (i.e., a carriage population). It also assumes a homogenous mixing of people across the district and that the basic disease dynamics are the same across the Sahel (such that the model parameters apply uniformly). To make the model tractable, we assumed that the number of people infected is small compared to overall population, that changes in district population are negligible, that both the susceptible and carriage populations are proportional to the overall district population, and that the disease cycle is less than 2 weeks.
The resulting linear finite difference equation relates the change in the number of new cases of meningitis to the number of cases in previous weeks and to the overall district population, through coefficients that were allowed to implicitly vary in time through their dependence on meteorological variables. These coefficients were determined using cross-validated logistic regression, and we asked whether the predictions for new cases of meningitis improved when the coefficients were allowed to vary with the weather. After testing over 90 meteorological variables with varying time lags, we found the most consistent improvement in the model's predictions came from including 2-week lagged relative humidity first and northeasterly winds second (the latter a possible surrogate for dry Harmattan winds and dust transport).
We found that a relative humidity of 40% marked an inflection point for the probability of a district exceeding the epidemic threshold (Fig. 5). Based on the 2 years of epidemiological data alone, the risk of a district experiencing an epidemic on any given week is only 2%. This represents background risk, an average risk that does not account for the meteorological influence on meningitis. If the relative humidity in the district is well below 40%, however, the risk of epidemic significantly exceeds the background risk, maximizing at 25%. Conversely, districts with a relative humidity above 40% have a lower risk of exceeding the epidemic threshold.
Based on the relationship shown in Fig. 5, we used a weekly average humiditybelow40%to differentiate between a district at continuing risk of epidemic and one in which persistent humidity would end the epidemic naturally. In practice, the exact value of the time-averaged relative humidity is not that important; what is important is the large shift from hot, dry conditions to cooler, moister condition, and the 40% relative humidity represents a convenient way to mark the boundary between these two conditions.
It is interesting to note that relative humidity is a better predictor of epidemic risk than absolute humidity, water content, or other measures of the absolute amount of water. This is consistent with the hypothesis that drying out the nasopharnyx increases the susceptibility to meningitis (
We also investigated whether meningitis cases could be correlated with proximity to water bodies and downwind direction, as described in more detail in McCormack et al. (2013). This investigation used meningitis data from the
To better understand the meteorology at the end of the meningitis season, our project included a team that analyzed the variability of the transition from dry to moist conditions in the western Sahel. This transition is largely driven by variations in the northward migration of the
UNDERSTANDING MENINGITIS IN
A good way to understand these factors is via surveys that explore people's knowledge, attitudes, and practices (KAP). Working with the NHRC, we focused our surveys on the
In 2010 and 2011, our team conducted quantitative KAP interviews throughout the
The interviews were based on a structured questionnaire administered by NHRC researchers in the preferred local language of the interviewee. The interviews were conducted in the dry season from November of 2010 through May of 2011. Individual survey participants gave informed consent, and all chiefs in the district approved the survey. NHRC, Ghana Health Service, and NCAR reviewed and approved the survey through their institutional review boards.
Over 85% of people surveyed indicated they would seek medical attention from either a clinic or hospital once they concluded that they or one of their family members had contracted meningitis. However, those who had experience with meningitis were much more likely to correctly identify the early symptoms of meningitis. Given the efficacy of early intervention, these results suggest that education about the early symptoms of meningitis would lead people to seek medical help sooner, improving health outcomes.
People who took the survey knew about the connection between meningitis and weather. Heat was the most commonly cited cause for meningitis among both cases and controls, and 70% of both groups selected hot and dry periods as the time of year meningitis is most severe.
The different histories of cases and controls revealed how migration and travel can influence meningitis risk. Many men from rural areas travel south during the dry season to seek farm-related work, essentially missing the entire meningitis season. However, these same men are more vulnerable if they return to northern
To help quantify the economic impact of meningitis and estimate the benefits of improved vaccination delivery, we included an additional set of survey questions for households who had experienced meningitis. This study and its results are described in more detail in Akweongo et al. (2013). These additional survey questions covered direct medical costs, like drugs, laboratory tests, and consultation fees as well as direct nonmedical costs associated with treatment like transportation, food, and lodging. Additional questions queried indirect costs associated with the lost ability to work while experiencing symptoms or taking care of family members. We did not collect data on the additional intangible costs that result from pain, discomfort, and changes in quality of life associated with the disease.
In Kassena-Nankana, we found that a household's expenditure on direct and indirect costs averaged
USING HUMIDITY FORECASTS TO MANAGE MENINGITIS. Given the impact of meningitis in the region, the correlation between meningitis cases and the average relative humidity, and the predictability of subseasonal and meridional variations in humidity, our next step was to help public health decision makers use relative humidity predictions to inform their vaccination decisions. Current global models routinely predict relative humidity up to 14 days in advance; coupled with the observed 2-week lag between relative humidity and meningitis cases, this means it is possible to make a meningitis prediction as much as a month ahead of time, enough lead time to influence a vaccination campaign (
The forecast of relative humidity begins with the World Meteorological Organization (WMO)
To deliver these forecasts to public health decision makers, we developed a prototype decision support system (Fig. 8). Using the Unidata Local Data Manager (Rew and Wilson 2001) and the Internet data delivery (Yoksas et al. 2006), we ingest forecast data automatically as soon as they become available and calibrate the forecasts using QR. Epidemiological data are collected manually by public health officials in various countries, and shared using commercial cloud services, currently
During the 2011/12 meningitis season, we participated in a weekly teleconference led by the
From the teleconferences, we learned to present our findings so that they could be integrated into existing knowledge and support existing decision processes. For example, public health officials were willing to include meteorological forecasts as one of several factors they would consider when making vaccination decisions according to the existing protocol. Purely statistical models that predicted future cases were used less by the decision makers; they were reluctant to cede their vaccination decisions to a model and concerned about the influence of many confounding factors for which the models failed to account explicitly.
We also learned to present information simply and concisely. For example, we modified our color table in the display to have a tight gradient around 40% average relative humidity (Fig. 8) because we found decision makers liked having a straightforward rule of thumb: decreased risk of meningitis when average humidity exceeds 40%. While our forecasts had the capability of looking at the spread in forecast relative humidity from TIGGE ensemble members, none of the public health officials were interested in using this capability.
To ensure this work continues and grows, and to ensure that it fulfills the
To assess the potential impact of the relative humidity forecasts, we also estimated how many vaccinations could have been saved had perfect relative humidity forecasts predicting the natural end of the epidemic been used to avoid launching vaccination campaigns. The value of these avoided vaccinations can be considered in terms of cost savings that can be reallocated toward treating meningitis, an opportunity to reallocate vaccines to more at-risk districts, or the ability to conserve vaccine for future epidemics. This methodology is imperfect, since it does not account for errors in the humidity prediction, including the negative impact of incorrectly anticipating high humidity and prematurely ending a vaccination campaign, but it does provide an upper bound for the value of the meteorology forecasts, which can be used to compare to the potential benefit of other interventions.
Our historic analysis used disease data from
During our study period, 474 noncontiguous epidemics occurred. Of these, there were 18 instances where the risk of continuation of epidemic levels dropped below the background risk because of the actual onset of high relative humidity, as shown in Fig. 9. Given that the accumulated population living in these districts was 3 million people, this implies that roughly 2.6 million doses of vaccine (ab out 3 million x 0.85 coverage) could have been more effectively positioned elsewhere around the meningitis belt if accurate weather forecasts had been provided and heeded. At an average cost of
COMMUNITY-INSPIRED METEOROLOGY. One outcome of this project is difficult to quantify: a subtle change in the way the U.S. scientists involved think about science and generate research questions and methods. Part of this came from interaction with the project sponsor, Google.org. The original driver for this project was a desire to improve meteorological capacity in
This mode of generating research has been called community-inspired research, in contrast to the more familiar mode of scientist-inspired research. While the general project was generated in response to community input and priorities from people throughout the Sahel, the core participating community was the community of public health practitioners who work in the Sahel.
From this simple difference in who asks the research question come considerable differences in the research process, and these differences are evident in this project. First, because community challenges seldom organize around traditional scientific disciplines, answering those challenges requires the integration of several disciplines. To develop an economic, pragmatic, and culturally appropriate solution, this project included epidemiologists, meteorologists, anthropologists, and economists. Second, data collection and analysis was a shared effort, with public health practitioners bringing epidemiological data and local knowledge and meteorologists contributing environmental data. Third, communityinspired research is often local or regional, and local knowledge is essential to the research. We saw in this study how local intuition provided the inspiration for researching the relation between humidity and meningitis. Another aspect of the importance of local knowledge showed up in the survey, where we found that a better understanding of early symptoms of meningitis might improve health outcomes. Fourth, community-inspired research is iterative and involves learning by both researchers and community members. If we understand the participating community to be the community of public health practitioners and decision makers who work in the Sahel, then the weekly teleconferences to inform decision making about vaccine deployment represented an interactive and co-learning environment that refined the research focus and improved its applicability. Finally, our project collaborated with and was inspired by the
CONCLUSIONS. This project produced several original results: it clarified and quantified the longobserved relationship between relative humidity and meningitis; revealed and documented knowledge, attitudes, and practices related to meningitis in rural
This project also enhanced capacity and offered educational opportunity. Several students, from high school through graduate school, in both
Much still remains to be done. Scientifically, while we have identified several weather-related factors that correlate with meningitis (including low relative humidity, high temperature, increased carbon monoxide, northeasterly winds, and enhanced local and regional smoke), we do not have a complete- enough understanding of transmission dynamics of the disease to determine the causal links behind these correlations (Trotter and Greenwood 2007) or understand how weather might interact with other social or biological factors. This paper also has not discussed the ongoing research investigating longertime-scale interactions between meningitis and the environment, which, while harder to identify and act on, could provide significantly more benefit. There are several decision needs that guide this research, including (from discussion at the 2012 MERIT meeting) the following: What kinds of correlations are significant and actionable on seasonal or climate time scales? What kind and quality of information do public health officials need to help them minimize the impact of future outbreaks within a season or in future seasons: for instance, by scaling their purchase of vaccine or prepositioning available vaccine? How could changing environmental conditions, including climate change, change the regions that are most vulnerable to meningitis?
ACKNOWLEDGMENTS. This work was primarily funded by Google.org. We are grateful to
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AFFILIATIONS:
Correspondin AUTHOR:
E-mail: [email protected]
The abstract for this article can be found in this issue, following the table of contents.
DOI: 10.1175/BAMS-D-13-00121.1
In final form
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